You can Erase All Memory on your controller and bring it back to factory specs by holding down the MENU and ADD buttons at the same time and scrolling through the menu until you get to Erase All Memory. Once you're there press ENTER and follow the instructions.
The only way to access Erase All Memory is by holding these 2 buttons. It could be that some sort of file may have corrupted on your SD2CF causing these issues so that's not a bad idea.
Another thing I'd like you to do is get in the habit of pressing and holding the BLACK button and bringing all your DMX channels to zero from time to time when you're programming. We recommend doing this like every 5-10 minutes when programming because this helps clear the memory buffer on the SD2CF that way no unwanted data from a previous scene for instance is stored on the memory.
Just a heads up if by chance you Erase All Memory, reload your fixtures profiles, program new scenes (while holding down the BLACK button from time to time) and you still have previous scene data coming up when programming, then it could be possible there might be an internal problem with your SD2CF on one of the PC Boards. It might need to be sent in for service after that. I just thought I'd bring that to your attention.
Please let me know if you need further assistance.