Hi Bill, this would be one of those, "It depends" situations. The reason it depends is because of how the switches could have been made or what the switches contain that may override or turn off other functions all together.
Also could you elaborate by what you mean as a scene "open?" to me open would be the scene editor window is open and you are editing the scene. If so, just clicking on switches from the fixture page doesn't mean they are getting add to whatever is going on in the button editor. You would need to play a scene then add in switches from the page like different gobos or colors or hit one of the dimmer chaser buttons, then create a new scene and do "as you see now" and then all of the buttons you clicked on, their data will be stored into the scene you are making.
Does this help answer your questions? Let me know, thanks!